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DNA Nanotechnology

CAD 형상 → DNA 오리가미 서열 자동 설계 · 코드 5종

ATHENAA GUI software that fully automates the sequence design of 2D and 3D wireframe DNA origami objects 2D · 3D
형상 ↓ · 엣지 →
DX 엣지 double crossover
6HB 엣지 6-helix bundle
2D평면 · 자유형
PERDIX2D · DX 엣지 METIS2D · 6HB 엣지
3D와이어프레임
DAEDALUS23D · DX 엣지 TALOS3D · 6HB 엣지
2D CAD · 3D PLY · GEO 코드 실행 스캐폴드 · 스테이플 서열 실험 (Wet Lab)
DX 엣지 = 나선 2가닥 (이중 교차) 6HB 엣지 = 6-나선 다발 2D = 평면 메시 · 3D = 다면체 와이어프레임 · 점 = 꼭짓점

Computational Mechanics

코드 2종 · Fortran

2D SATURN An educational FEA package for linear static 2D plane stress... 3D MERCURY A FORTRAN-based FEA package for linear and nonlinear shell s...

DNA Nanotechnology

PERDIX

PERDIX Fortran

PERDIX automatically converts 2D CAD files into DNA sequences for free-form DNA origami design

Intel Fortran CompilerShapely 1.6.4, PyDistMesh 1.2MATLAB 2014-2018 (DistMesh)
CodePaper 1Paper 2
ATHENA

ATHENA Python

A GUI software that fully automates the sequence design of 2D and 3D wireframe DNA origami objects

Python 3.7+ (numpy >= 1.16.2)PySide2 5.12.3 (Qt5 API, Qt3D, QML)Rendering: GLSL (OpenGL Shading)
CodePaper 1
METIS

METIS Fortran

Automates converting 2D CAD files to DNA sequences for 6HB-based DNA origami design

Fortran: Intel Fortran CompilerShapely 1.6.4, PyDistMesh 1.2MATLAB 2014-2018 (DistMesh)
CodePaper 1Paper 2
TALOS

TALOS Fortran

Automates converting 3D PLY files to DNA sequences for 6HB-based 3D DNA origami design

Intel Fortran Compiler (Fortran 90/95/2003/2008) via Intel Parallel Studio XE 2016-2018
CodePaper 1Paper 2
DAEDALUS2

DAEDALUS2 Fortran

Automates converting CAD files (GEO, PLY) to DNA sequences for DX-based wireframe design

Fortran: Intel Fortran Compiler (Fortran 90/95) via Intel Parallel Studio XE 2016-2018
CodePaper 1

Computational Mechanics

SATURN

SATURN Fortran

An educational FEA package for linear static 2D plane stress analysis using 4-node elements

Intel Fortran Compiler (Fortran 90/95/2003/2008) via Intel Parallel Studio XE 2017+
Code
MERCURY

MERCURY Fortran

A FORTRAN-based FEA package for linear and nonlinear shell structural analysis using the MITC method

Intel Fortran Compiler (Fortran 90/95/2003/2008) via Intel Parallel Studio XE 2017+
CodePaper 1Paper 2

Commercial Software

ANSYS
ANSYS Ansys 2023 R1 Academic Research

Structural Analysis & Design Optimization

  • Academic Research Structures
  • Academic Research Fluids
ansys.com
COMSOL
COMSOL COMSOL 2024 Academic Research

Multiphysics Modeling & Simulation

  • Multiphysics, Structural Mechanics, Nonlinear Structural Materials
  • CFD, Heat Transfer, Design
comsol.com
OriginLab OrginPro
OriginLab OrginPro Origin Pro 2022b

Graphing for Science and Engineering

  • Node-Lock License
  • Node-Lock License w/Dongle
originlab.com
TecPlot
TecPlot Tecplot 360 Academic Network

CFD Visualization & Analysis

  • Tecplot 360, RS, Fieldview
  • Chorus, PyTecplot, SZL Server
tecplot.com