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Software

In-house Code Commercial Software

In-house Code

PERDIX

PERDIX

DNA Nanotechnology

PERDIX automatically converts 2D CAD files into DNA sequences for free-form DNA origami design

Intel Fortran Compiler

Shapely 1.6.4, PyDistMesh 1.2

MATLAB 2014-2018 (DistMesh)

Code

Paper ¹

Paper ²

ATHENA

ATHENA

DNA Nanotechnology

A GUI software that fully automates the sequence design of 2D and 3D wireframe DNA origami objects

Python 3.7+ (numpy >= 1.16.2)

PySide2 5.12.3 (Qt5 API, Qt3D, QML)

Rendering: GLSL (OpenGL Shading)

Code

Paper ¹

METIS

METIS

DNA Nanotechnology

Automates converting 2D CAD files to DNA sequences for 6HB-based DNA origami design

Fortran: Intel Fortran Compiler

Shapely 1.6.4, PyDistMesh 1.2

MATLAB 2014-2018 (DistMesh)

Code

Paper ¹

Paper ²

TALOS

TALOS

DNA Nanotechnology

Automates converting 3D PLY files to DNA sequences for 6HB-based 3D DNA origami design

Intel Fortran Compiler (Fortran 90/95/2003/2008) via Intel Parallel Studio XE 2016-2018

Code

Paper ¹

Paper ²

DAEDALUS2

DAEDALUS2

DNA Nanotechnology

Automates converting CAD files (GEO, PLY) to DNA sequences for DX-based wireframe design

Fortran: Intel Fortran Compiler (Fortran 90/95) via Intel Parallel Studio XE 2016-2018

Code

Paper ¹

SATURN

SATURN

Computational Mechanics

An educational FEA package for linear static 2D plane stress analysis using 4-node elements

Intel Fortran Compiler (Fortran 90/95/2003/2008) via Intel Parallel Studio XE 2017+

Code

MERCURY

MERCURY

Computational Mechanics

A FORTRAN-based FEA package for linear and nonlinear shell structural analysis using the MITC method

Intel Fortran Compiler (Fortran 90/95/2003/2008) via Intel Parallel Studio XE 2017+

Code

Paper ¹

Paper ²

Commercial Software

ANSYS

ANSYS

Ansys 2023 R1 Academic Research

Structural Analysis & Design Optimization

Academic Research Structures

Academic Research Fluids

Official Web

COMSOL

COMSOL

COMSOL 2024 Academic Research

Multiphysics Modeling & Simulation

Multiphysics, Structural Mechanics, Nonlinear Structural Materials

CFD, Heat Transfer, Design

Official Web

OriginLab OrginPro

OriginLab OrginPro

Origin Pro 2022b

Graphing for Science and Engineering

Node-Lock License

Node-Lock License w/Dongle

Official Web

TecPlot

TecPlot

Tecplot 360 Academic Network

CFD Visualization & Analysis

Tecplot 360, RS, Fieldview

Chorus, PyTecplot, SZL Server

Official Web