PERDIX

PERDIX (Programmed Eulerian Routing for DNA Design using X-overs) is a new, free, and open-source software package written in FORTRAN 90/95 that enables the automated conversion of 2D computer-generated design files into DNA sequences. These DNA sequences can be subsequently synthesized and mixed to fold DNA DX-based wireframe 2D lattices with high fidelity.

ATHENA

Athena is an open-source Graphical User Interface (GUI) software application that performs fully automated sequence design of 2D and 3D wireframe scaffolded DNA origami objects based only on a simple input wireframe geometric design file.

METIS

METIS is a new, free, and open-source software package written in FORTRAN 90/95 that enables the automated conversion of 2D computer-generated design files into DNA sequences. These DNA sequences can then be synthesized and mixed to fold DNA 6HB-based wireframe 2D lattices with high fidelity.

TALOS

TALOS (Three-dimensional, Algorithmically-Generated Library of Origami Shapes) is a new, free, and open-source software package written by FORTRAN 90/95 that enables the automated conversion of 3D computer-generated design files (PLY) into DNA sequences. These DNA sequences can be subsequently synthesized and mixed to fold DNA 6HB-based wireframe 3D nanoparticles with high fidelity.

DAEDALUS2

DAEDALUS2 is a publicly available software package that is written in FORTRAN 90/95. Its main function is to enable the automated conversion of computer-generated design files into DNA sequences. These DNA sequences can then be synthesized and combined to create 3D lattices made of DNA DX-based wireframes with a high degree of accuracy.

SATURN

SATURN is a software package written in FORTRAN 90/95 for linear finite element analysis. EDU is a version of SATURN designed for 4-node finite element.

MERCURY

MERCURY is a finite element software package written in FORTRAN 90/95 for linear and nonlinear shell structural analysis. MITC is the standard shell finite element with the MITC (Mixed Interpolation of Tensorial Components) method.